Computational Bio-Pipeline Execution Log
About this template
A computational pipeline execution log for a GATK4 whole-genome workflow, recording the pipeline DAG, tool versions and flags, run times, inputs and exit status, with code listings.
Tags
What is in this template
Read from the source files of this template.
- Document class
article[10pt, a4paper]- Compiles with
- pdfLaTeX
- Pages in the compiled PDF
- 3
- Bibliography
- None
- Files
- 2 files: 1 .tex, 1 image
- Packages
inputencfontencgeometryxcolortcolorboxfontawesome5tabularxbooktabscolortbllistingsfancyhdrlastpagearraytikzhelvetinconsolataenumitemamsmathamssymbhyperref
\documentclass[10pt,a4paper]{article}
% --- PACKAGES ---
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage[margin=0.55in, top=0.6in, bottom=0.65in, headheight=20pt]{geometry}
\usepackage{xcolor}
\usepackage{tcolorbox}
\tcbuselibrary{skins, breakable}
\usepackage{fontawesome5}
\usepackage{tabularx}
\usepackage{booktabs}
\usepackage{colortbl}
\usepackage{listings}
\usepackage{fancyhdr}
\usepackage{lastpage}
\usepackage{array}
\usepackage{tikz}
\usetikzlibrary{calc, positioning, shapes.geometric, backgrounds}
\usepackage{helvet}
\renewcommand{\familydefault}{\sfdefault}
\usepackage{inconsolata}
\usepackage{enumitem}
\usepackage{amsmath, amssymb}
\usepackage[hidelinks, colorlinks=true, linkcolor=NavyDark, urlcolor=TealAccent]{hyperref}
% --- COLOR PALETTE ---
\definecolor{NavyDark}{HTML}{0F2C59}
\definecolor{TealAccent}{HTML}{00A896}
\definecolor{TealLight}{HTML}{E6F4F1}
\definecolor{StatusGreen}{HTML}{059669}
\definecolor{StatusGreenBg}{HTML}{D1FAE5}
\definecolor{StatusAmber}{HTML}{D97706}
\definecolor{CodeBg}{HTML}{0F172A}
\definecolor{CodeText}{HTML}{F8FAFC}
\definecolor{TextDark}{HTML}{1E293B}
\definecolor{TextMuted}{HTML}{64748B}
\definecolor{LightGrayBg}{HTML}{F8FAFC}
\definecolor{BorderGray}{HTML}{E2E8F0}
\definecolor{CommentGray}{HTML}{94A3B8}Put this template on your own page
Paste this badge on a thesis guide, a course page or a README. One click opens the template as a new project in the reader's own LetX account.
[](https://letx.app/open?template=bioinformatics-pipeline-log)<a href="https://letx.app/open?template=bioinformatics-pipeline-log"><img src="https://letx.app/badges/open-in-letx.svg" alt="Open in LetX"></a>Frequently asked questions
What does the Computational Bio-Pipeline Execution Log template load?
It uses the article class (options: 10pt, a4paper), builds with pdfLaTeX, and loads 20 packages, including inputenc, fontenc, geometry, xcolor, tcolorbox, fontawesome5, tabularx and booktabs.
How long is the Computational Bio-Pipeline Execution Log sample?
The compiled sample is 3 pages, from 2 files: 1 .tex, 1 image. Replace the sample text with yours and the layout stays.
Is the Computational Bio-Pipeline Execution Log template free to use online?
Yes. "Open as Template" makes it your own LetX project: edit the LaTeX in the browser, invite collaborators to edit with you in real time, and download the compiled PDF. There is nothing to install.
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